Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 840028..840737 Replicon chromosome
Accession NZ_CP096840
Organism Mycobacterium tuberculosis variant bovis strain Mb2269

Toxin (Protein)


Gene name vapC Uniprot ID P9WF74
Locus tag M1780_RS03975 Protein ID WP_003403837.1
Coordinates 840309..840737 (+) Length 143 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TEX4
Locus tag M1780_RS03970 Protein ID WP_003403834.1
Coordinates 840028..840285 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M1780_RS03965 (M1780_03965) 837210..839937 + 2728 Protein_784 PE family protein -
M1780_RS03970 (M1780_03970) 840028..840285 + 258 WP_003403834.1 ribbon-helix-helix protein, CopG family Antitoxin
M1780_RS03975 (M1780_03975) 840309..840737 + 429 WP_003403837.1 type II toxin-antitoxin system VapC family toxin Toxin
M1780_RS03980 (M1780_03980) 840818..840955 - 138 WP_003403839.1 hypothetical protein -
M1780_RS03985 (M1780_03990) 841114..841359 + 246 WP_003403841.1 hypothetical protein -
M1780_RS03990 (M1780_03995) 841428..842312 - 885 WP_003403844.1 3-hydroxyisobutyrate dehydrogenase -
M1780_RS03995 (M1780_04000) 842323..843495 - 1173 WP_010950438.1 acyl-CoA dehydrogenase family protein -
M1780_RS04000 (M1780_04005) 843502..845034 - 1533 WP_003403847.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain toxin

(1-141)

Antitoxin

Ribbon-helix-helix protein, CopG

(2-36)


Sequences

Toxin        


Download         Length: 143 a.a.        Molecular weight: 15831.27 Da        Isoelectric Point: 7.5536

>T243569 WP_003403837.1 NZ_CP096840:840309-840737 [Mycobacterium tuberculosis variant bovis]
MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPSPRAEAFAFVEAVTAQPHHL
PTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAVVSLDRDFARFASVRHIRPPL

Download         Length: 429 bp

>T243569 NZ_OX411212:1482804-1483091 [Vibrio campbellii]
ATGACTTATAAGCTTAAATTTCTACCAGCTGCCAAGAAAGAATGGAGCAAGTTAGCTCCACCAATTCAAAGTCAGTTCAA
AAAGAAGCTTAAAGAACGGCTAGAAAACCCGCATGTTCCTTCGTCTAAACTTCGTGGCTATGACTCAGTTTATAAGATCA
AACTTCGTACAGCAGGCTATCGCTTAGCCTATGAAGTCATTGACGACGAAATCGTGGTGTATGTGTTGGCTATTGGAAAG
CGAGATAAAGATGCAGTGTACAAAAAGTTAGCATCGAGGTTCTCGTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9114.28 Da        Isoelectric Point: 10.6530

>AT243569 WP_003403834.1 NZ_CP096840:840028-840285 [Mycobacterium tuberculosis variant bovis]
MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGARPTVPVFDGGTGPRRGIDLTSNRALSEVLDEGLE
LNSRK

Download         Length: 258 bp

>AT243569 NZ_OX411212:1482563-1482814 [Vibrio campbellii]
ATGAGACAGGTTTTAGCTGATTGTTCAGCAAGTATTTCTGAGTTAAAGAAAAATCCAACCGCTTTGCTAAATGAAGCTGA
TGGTTCTGCCATTGCTATTCTAAACCACAATAAGCCAGCAGCGTATCTTGTCCCAGCAGAAACTTATGAGTTTCTGATGG
ATATGCTCGATGACTACGAGCTTGCTAAACTAGTTGAAAGTCGCCGCGGTGAGTTATCTGAAGCGGTGGAAGTAGATATC
GATGACTTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829CDR3

Antitoxin

Source ID Structure
AlphaFold DB G0TEX4

References