Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2345571..2345842 | Replicon | chromosome |
| Accession | NC_013364 | ||
| Organism | Escherichia coli O111:H- str. 11128 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2345609..2345712 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2345571..2345842 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECO111_RS12265 | 2342728..2344167 | + | 1440 | WP_000057021.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECO111_RS12270 | 2344285..2344521 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECO111_RS12275 | 2344626..2344817 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECO111_RS12280 | 2344818..2345474 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2345571..2345842 | + | 272 | - | - | Antitoxin |
| - | 2345609..2345712 | - | 104 | - | - | Toxin |
| ECO111_RS12290 | 2345870..2346211 | - | 342 | WP_000976492.1 | YebY family protein | - |
| ECO111_RS12295 | 2346224..2347096 | - | 873 | WP_000879274.1 | copper homeostasis membrane protein CopD | - |
| ECO111_RS12300 | 2347100..2347474 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| ECO111_RS12305 | 2347613..2347843 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECO111_RS12310 | 2347945..2348601 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ECO111_RS12315 | 2348625..2349287 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T24352 NC_013364:c2345712-2345609 [Escherichia coli O111:H- str. 11128]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT24352 NC_013364:2345571-2345842 [Escherichia coli O111:H- str. 11128]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
