Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2026674..2026945 | Replicon | chromosome |
| Accession | NZ_CP096837 | ||
| Organism | Escherichia coli strain PS10-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2026805..2026907 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2026674..2026945 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MYF74_RS09540 | 2023230..2023892 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MYF74_RS09545 | 2023916..2024572 | - | 657 | WP_000011655.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MYF74_RS09550 | 2024674..2024904 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MYF74_RS09555 | 2025043..2025417 | + | 375 | WP_248748206.1 | CopC domain-containing protein YobA | - |
| MYF74_RS09560 | 2025421..2026293 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| MYF74_RS09565 | 2026305..2026646 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2026674..2026945 | - | 272 | - | - | Antitoxin |
| - | 2026805..2026907 | + | 103 | - | - | Toxin |
| MYF74_RS09570 | 2027042..2027698 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| MYF74_RS09575 | 2027699..2027890 | - | 192 | WP_001313035.1 | YebW family protein | - |
| MYF74_RS09580 | 2027995..2028231 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MYF74_RS09585 | 2028349..2029788 | - | 1440 | WP_024182001.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T243477 NZ_CP096837:2026805-2026907 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT243477 NZ_CP096837:c2026945-2026674 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTAAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTAAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
