Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | mazEF/PRK09907-MazE |
Location | 3792254..3792837 | Replicon | chromosome |
Accession | NZ_CP096834 | ||
Organism | Escherichia coli strain PM4-5 |
Toxin (Protein)
Gene name | mazF | Uniprot ID | U9XFN8 |
Locus tag | MYF75_RS19935 | Protein ID | WP_000254745.1 |
Coordinates | 3792502..3792837 (+) | Length | 112 a.a. |
Antitoxin (Protein)
Gene name | mazE | Uniprot ID | S1P3W5 |
Locus tag | MYF75_RS19930 | Protein ID | WP_000581937.1 |
Coordinates | 3792254..3792502 (+) | Length | 83 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
MYF75_RS19920 (3788593) | 3788593..3789894 | + | 1302 | WP_000046790.1 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
MYF75_RS19925 (3789942) | 3789942..3792176 | + | 2235 | WP_000226815.1 | GTP pyrophosphokinase | - |
MYF75_RS19930 (3792254) | 3792254..3792502 | + | 249 | WP_000581937.1 | type II toxin-antitoxin system antitoxin MazE | Antitoxin |
MYF75_RS19935 (3792502) | 3792502..3792837 | + | 336 | WP_000254745.1 | endoribonuclease MazF | Toxin |
MYF75_RS19940 (3792908) | 3792908..3793699 | + | 792 | WP_001071648.1 | nucleoside triphosphate pyrophosphohydrolase | - |
MYF75_RS19945 (3793927) | 3793927..3795564 | + | 1638 | WP_000210878.1 | CTP synthase (glutamine hydrolyzing) | - |
MYF75_RS19950 (3795652) | 3795652..3796950 | + | 1299 | WP_000036723.1 | phosphopyruvate hydratase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 112 a.a. Molecular weight: 12158.08 Da Isoelectric Point: 8.4777
>T243460 WP_000254745.1 NZ_CP096834:3792502-3792837 [Escherichia coli]
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKS
IAWRARGATKKGTVAPEELQLIKAKINVLIG
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKS
IAWRARGATKKGTVAPEELQLIKAKINVLIG
Download Length: 336 bp
>T243460 NZ_OX352322:c5374938-5374756 [Pseudomonas sp. MM223]
ATGAAATACAGTGAATTTCGCCGATGGCTACGCGGCCAGGGCGCTACGTTCGTGGCAGCCAAGGGCAGTCATTTCAAGGT
TTACCTAGGCAATCGGCAAACGATTTTCCCGGATCATGGCGCGAAGGAAATCAGTGAGGGCCTGAGAAAGAAGATCCTGA
AAGACTTGGGATTGAAAGCATGA
ATGAAATACAGTGAATTTCGCCGATGGCTACGCGGCCAGGGCGCTACGTTCGTGGCAGCCAAGGGCAGTCATTTCAAGGT
TTACCTAGGCAATCGGCAAACGATTTTCCCGGATCATGGCGCGAAGGAAATCAGTGAGGGCCTGAGAAAGAAGATCCTGA
AAGACTTGGGATTGAAAGCATGA
Antitoxin
Download Length: 83 a.a. Molecular weight: 9355.74 Da Isoelectric Point: 4.4665
>AT243460 WP_000581937.1 NZ_CP096834:3792254-3792502 [Escherichia coli]
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKE
VW
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKE
VW
Download Length: 249 bp
>AT243460 NZ_OX352322:c5374732-5374310 [Pseudomonas sp. MM223]
ATATTCGAGTACCCGGTGGTCGTTCATCAAGAAGACGGCAGTGTTTGGGTGAGTTGTCCCGATGTACCAGAAATGGCCTG
CGCGGGTGATACTTCGGAGGAGGCGCTGTTCGATGCTGTGGATGCGTTGGAGTCTGCGCTTTCCTTCTATGTGGATCAGA
AGCACGCTATCCCGCTACCTTCAGCGCCTACAGAGGGTCATCCCGTCGTACGTCTGCCAGCCCTGACGGCAGCGAAGGCG
GCGCTGTGGAACACGATGGTGGCACAAAAAATCAGCAAGACCGAGATGGCGCGCAGGCTAGGGGTAAATCGTCCCCAGGT
CGATCGTCTGGTCGATCTGTTGCACCGCTCCAAAATCGAGCAGGTTGAGCATGCGCTGAATGTGTTGGGGCAGCGAATCG
AGCTTTCAGTCGTAGCCGTTTGA
ATATTCGAGTACCCGGTGGTCGTTCATCAAGAAGACGGCAGTGTTTGGGTGAGTTGTCCCGATGTACCAGAAATGGCCTG
CGCGGGTGATACTTCGGAGGAGGCGCTGTTCGATGCTGTGGATGCGTTGGAGTCTGCGCTTTCCTTCTATGTGGATCAGA
AGCACGCTATCCCGCTACCTTCAGCGCCTACAGAGGGTCATCCCGTCGTACGTCTGCCAGCCCTGACGGCAGCGAAGGCG
GCGCTGTGGAACACGATGGTGGCACAAAAAATCAGCAAGACCGAGATGGCGCGCAGGCTAGGGGTAAATCGTCCCCAGGT
CGATCGTCTGGTCGATCTGTTGCACCGCTCCAAAATCGAGCAGGTTGAGCATGCGCTGAATGTGTTGGGGCAGCGAATCG
AGCTTTCAGTCGTAGCCGTTTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0E0XYM3 |
Antitoxin
Source | ID | Structure |
---|---|---|
PDB | 1UB4 | |
PDB | 5CQX | |
PDB | 5CQY | |
PDB | 1MVF | |
PDB | 2MRN | |
PDB | 2MRU | |
AlphaFold DB | A0A7U9LMB4 |