Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3144140..3144285 | Replicon | chromosome |
| Accession | NZ_CP096814 | ||
| Organism | Klebsiella pneumoniae strain Mu1413 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3144147..3144249 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3144140..3144285 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M1R63_RS15445 | 3139671..3141104 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M1R63_RS15450 | 3141220..3141459 | + | 240 | WP_002911393.1 | YebV family protein | - |
| M1R63_RS15455 | 3141557..3141748 | + | 192 | WP_002911395.1 | YebW family protein | - |
| M1R63_RS15460 | 3141745..3142398 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M1R63_RS15465 | 3142555..3143523 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M1R63_RS15470 | 3143628..3143771 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3144140..3144285 | + | 146 | - | - | Antitoxin |
| - | 3144147..3144249 | - | 103 | - | - | Toxin |
| M1R63_RS15475 | 3144408..3144746 | - | 339 | WP_002911404.1 | YebY family protein | - |
| M1R63_RS15480 | 3144763..3145632 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| M1R63_RS15485 | 3145636..3146010 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M1R63_RS15490 | 3146123..3146353 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M1R63_RS15495 | 3146432..3147091 | + | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| M1R63_RS15500 | 3147095..3149155 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T243393 NZ_CP096814:c3144249-3144147 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT243393 NZ_CP096814:3144140-3144285 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
