Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2029247..2029518 | Replicon | chromosome |
| Accession | NZ_CP096587 | ||
| Organism | Escherichia coli strain EC6622 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2029377..2029480 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2029247..2029518 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M1B75_RS09965 | 2025802..2026464 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| M1B75_RS09970 | 2026488..2027144 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M1B75_RS09975 | 2027246..2027476 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M1B75_RS09980 | 2027615..2027989 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| M1B75_RS09985 | 2027993..2028865 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| M1B75_RS09990 | 2028878..2029219 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2029247..2029518 | - | 272 | - | - | Antitoxin |
| - | 2029377..2029480 | + | 104 | - | - | Toxin |
| M1B75_RS09995 | 2029615..2030271 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| M1B75_RS10000 | 2030272..2030463 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M1B75_RS10005 | 2030568..2030804 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M1B75_RS10010 | 2030922..2032361 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T243188 NZ_CP096587:2029377-2029480 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT243188 NZ_CP096587:c2029518-2029247 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
