Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3300622..3300769 | Replicon | chromosome |
| Accession | NZ_CP096263 | ||
| Organism | Klebsiella quasipneumoniae strain KP20-558 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3300626..3300728 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3300622..3300769 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M0M92_RS15830 | 3296150..3297580 | + | 1431 | WP_131096027.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M0M92_RS15835 | 3297696..3297935 | + | 240 | WP_002911393.1 | YebV family protein | - |
| M0M92_RS15840 | 3298033..3298224 | + | 192 | WP_002911395.1 | YebW family protein | - |
| M0M92_RS15845 | 3298221..3298874 | - | 654 | WP_023290232.1 | protein-serine/threonine phosphatase | - |
| M0M92_RS15850 | 3299031..3299999 | + | 969 | WP_165476257.1 | VirK/YbjX family protein | - |
| M0M92_RS15855 | 3300104..3300247 | + | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| - | 3300622..3300769 | + | 148 | - | - | Antitoxin |
| - | 3300626..3300728 | - | 103 | - | - | Toxin |
| M0M92_RS15860 | 3300887..3301225 | - | 339 | WP_002911404.1 | YebY family protein | - |
| M0M92_RS15865 | 3301242..3302111 | - | 870 | WP_048297809.1 | copper homeostasis membrane protein CopD | - |
| M0M92_RS15870 | 3302115..3302489 | - | 375 | WP_131096029.1 | CopC domain-containing protein YobA | - |
| M0M92_RS15875 | 3302602..3302832 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M0M92_RS15880 | 3302911..3303570 | + | 660 | WP_023290237.1 | exodeoxyribonuclease X | - |
| M0M92_RS15885 | 3303574..3305634 | - | 2061 | WP_048297811.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T243020 NZ_CP096263:c3300728-3300626 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT243020 NZ_CP096263:3300622-3300769 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
