Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1989719..1989864 | Replicon | chromosome |
| Accession | NZ_CP096260 | ||
| Organism | Klebsiella pneumoniae strain KP19-2796 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1989755..1989857 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1989719..1989864 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M0M88_RS09655 | 1984849..1986909 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| M0M88_RS09660 | 1986913..1987572 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| M0M88_RS09665 | 1987651..1987881 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M0M88_RS09670 | 1987994..1988368 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M0M88_RS09675 | 1988372..1989241 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| M0M88_RS09680 | 1989258..1989596 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1989719..1989864 | - | 146 | - | - | Antitoxin |
| - | 1989755..1989857 | + | 103 | - | - | Toxin |
| M0M88_RS09685 | 1990233..1990376 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M0M88_RS09690 | 1990481..1991449 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M0M88_RS09695 | 1991606..1992259 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M0M88_RS09700 | 1992256..1992447 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M0M88_RS09705 | 1992545..1992784 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M0M88_RS09710 | 1992900..1994333 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T242998 NZ_CP096260:1989755-1989857 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT242998 NZ_CP096260:c1989864-1989719 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
