Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2072075..2072220 | Replicon | chromosome |
| Accession | NZ_CP096242 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain DD01665 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2072111..2072213 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2072075..2072220 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M0535_RS09915 | 2067205..2069265 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| M0535_RS09920 | 2069269..2069928 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| M0535_RS09925 | 2070007..2070237 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M0535_RS09930 | 2070350..2070724 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M0535_RS09935 | 2070728..2071597 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| M0535_RS09940 | 2071614..2071952 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2072075..2072220 | - | 146 | - | - | Antitoxin |
| - | 2072111..2072213 | + | 103 | - | - | Toxin |
| M0535_RS09945 | 2072588..2072731 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M0535_RS09950 | 2072836..2073804 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| M0535_RS09955 | 2073961..2074614 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M0535_RS09960 | 2074611..2074802 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M0535_RS09965 | 2074900..2075139 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M0535_RS09970 | 2075255..2076688 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T242958 NZ_CP096242:2072111-2072213 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT242958 NZ_CP096242:c2072220-2072075 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
