Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 4606798..4607586 | Replicon | chromosome |
| Accession | NZ_CP096201 | ||
| Organism | Kluyvera ascorbata strain SK | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | A0A7L6ILI8 |
| Locus tag | MY052_RS22020 | Protein ID | WP_047359063.1 |
| Coordinates | 4607209..4607586 (+) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | MY052_RS22015 | Protein ID | WP_047363950.1 |
| Coordinates | 4606798..4607157 (+) | Length | 120 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MY052_RS21975 (MY052_21975) | 4602055..4602876 | + | 822 | WP_032751326.1 | DUF932 domain-containing protein | - |
| MY052_RS21980 (MY052_21980) | 4603092..4603793 | + | 702 | WP_047359069.1 | WYL domain-containing protein | - |
| MY052_RS21985 (MY052_21985) | 4603832..4604671 | + | 840 | WP_131797571.1 | hypothetical protein | - |
| MY052_RS21990 (MY052_21990) | 4604693..4605166 | + | 474 | WP_181502091.1 | hypothetical protein | - |
| MY052_RS21995 (MY052_21995) | 4605244..4605483 | + | 240 | WP_047359067.1 | DUF905 domain-containing protein | - |
| MY052_RS22000 (MY052_22000) | 4605580..4606041 | + | 462 | WP_047359066.1 | antirestriction protein | - |
| MY052_RS22005 (MY052_22005) | 4606053..4606532 | + | 480 | WP_047359065.1 | DNA repair protein RadC | - |
| MY052_RS22010 (MY052_22010) | 4606553..4606774 | + | 222 | WP_000691982.1 | DUF987 domain-containing protein | - |
| MY052_RS22015 (MY052_22015) | 4606798..4607157 | + | 360 | WP_047363950.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| MY052_RS22020 (MY052_22020) | 4607209..4607586 | + | 378 | WP_047359063.1 | TA system toxin CbtA family protein | Toxin |
| MY052_RS22025 (MY052_22025) | 4607583..4608074 | + | 492 | WP_248537860.1 | DUF5983 family protein | - |
| MY052_RS22030 (MY052_22030) | 4608103..4608306 | + | 204 | WP_047359061.1 | DUF957 domain-containing protein | - |
| MY052_RS22035 (MY052_22035) | 4608385..4609233 | + | 849 | WP_088732394.1 | DUF4942 domain-containing protein | - |
| MY052_RS22040 (MY052_22040) | 4609761..4609937 | + | 177 | WP_202216712.1 | hypothetical protein | - |
| MY052_RS22045 (MY052_22045) | 4610038..4611180 | - | 1143 | WP_202216713.1 | PLP-dependent aspartate aminotransferase family protein | - |
| MY052_RS22050 (MY052_22050) | 4611191..4612561 | - | 1371 | WP_202216714.1 | pyridoxal-phosphate dependent enzyme | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14078.86 Da Isoelectric Point: 7.0606
>T242864 WP_047359063.1 NZ_CP096201:4607209-4607586 [Kluyvera ascorbata]
VQTQPLSSTHETSPRPSPVDIWQHLLNHLLDRHYGLTLNDTPFGNDGVIQEHIDAGISLCDAVNFIVEKYDLVRTDRRGF
SADTQSPLIGSIDILRARKATGLMTRHGYRPVTDLITGKYKKEQQ
VQTQPLSSTHETSPRPSPVDIWQHLLNHLLDRHYGLTLNDTPFGNDGVIQEHIDAGISLCDAVNFIVEKYDLVRTDRRGF
SADTQSPLIGSIDILRARKATGLMTRHGYRPVTDLITGKYKKEQQ
Download Length: 378 bp
>T242864 NZ_OW967966:3797454-3797672 [Escherichia coli]
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACTATGAATAAACTGTACGACAAGATCCCTTCCTCAGTATGGAAATTTATTCGCTAA
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACTATGAATAAACTGTACGACAAGATCCCTTCCTCAGTATGGAAATTTATTCGCTAA
Antitoxin
Download Length: 120 a.a. Molecular weight: 13207.00 Da Isoelectric Point: 6.7434
>AT242864 WP_047363950.1 NZ_CP096201:4606798-4607157 [Kluyvera ascorbata]
MSNKIPAENHDITEPWWGLKRSITPCFGARLVQEGNRLHYLADRASIAGTFSDADLRHLDQAFPVQLKQLELMLVSGELN
PRHQHCVTLYSKGLTCEADSLGSHGYVYIAIYPTPAATA
MSNKIPAENHDITEPWWGLKRSITPCFGARLVQEGNRLHYLADRASIAGTFSDADLRHLDQAFPVQLKQLELMLVSGELN
PRHQHCVTLYSKGLTCEADSLGSHGYVYIAIYPTPAATA
Download Length: 360 bp
>AT242864 NZ_OW967966:3797054-3797428 [Escherichia coli]
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACCCTGTATCATGACTGTCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTTAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGCAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACCCTGTATCATGACTGTCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTTAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGCAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|