Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2093061..2093205 | Replicon | chromosome |
| Accession | NZ_CP096201 | ||
| Organism | Kluyvera ascorbata strain SK | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2093097..2093199 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2093061..2093205 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MY052_RS09900 (MY052_09900) | 2089537..2090196 | - | 660 | WP_202217747.1 | exodeoxyribonuclease X | - |
| MY052_RS09905 (MY052_09905) | 2090219..2090887 | - | 669 | WP_248538714.1 | carbon-nitrogen hydrolase family protein | - |
| MY052_RS09910 (MY052_09910) | 2090977..2091207 | - | 231 | WP_035891678.1 | DNA polymerase III subunit theta | - |
| MY052_RS09915 (MY052_09915) | 2091345..2091719 | + | 375 | WP_202217749.1 | CopC domain-containing protein YobA | - |
| MY052_RS09920 (MY052_09920) | 2091721..2092590 | + | 870 | WP_248538715.1 | copper homeostasis membrane protein CopD | - |
| MY052_RS09925 (MY052_09925) | 2092603..2092941 | + | 339 | WP_115074432.1 | YebY family protein | - |
| - | 2093061..2093205 | - | 145 | - | - | Antitoxin |
| - | 2093097..2093199 | + | 103 | - | - | Toxin |
| MY052_RS09930 (MY052_09930) | 2093684..2094619 | + | 936 | WP_035891672.1 | kdo(2)-lipid IV(A) palmitoleoyltransferase | - |
| MY052_RS09935 (MY052_09935) | 2094651..2094890 | - | 240 | WP_035891671.1 | YebV family protein | - |
| MY052_RS09940 (MY052_09940) | 2095001..2096440 | - | 1440 | WP_248538716.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T242851 NZ_CP096201:2093097-2093199 [Kluyvera ascorbata]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT242851 NZ_CP096201:c2093205-2093061 [Kluyvera ascorbata]
ACAGATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCTTTATAAGAATAGATGACCGTGACAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCTTTATAAGAATAGATGACCGTGACAGGTTTTCCAGT
