Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2847405..2847550 | Replicon | chromosome |
| Accession | NZ_CP096187 | ||
| Organism | Enterobacter roggenkampii isolate C3-17 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2847412..2847515 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2847405..2847550 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M0769_RS13785 (M0769_13780) | 2842627..2844069 | + | 1443 | WP_123922252.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M0769_RS13790 (M0769_13785) | 2844176..2844415 | + | 240 | WP_008500472.1 | YebV family protein | - |
| M0769_RS13795 (M0769_13790) | 2844450..2845094 | - | 645 | WP_095442391.1 | protein-serine/threonine phosphatase | - |
| M0769_RS13800 (M0769_13795) | 2845261..2846202 | + | 942 | WP_069598482.1 | VirK/YbjX family protein | - |
| M0769_RS13805 (M0769_13800) | 2846509..2847000 | - | 492 | WP_023293949.1 | hypothetical protein | - |
| - | 2847405..2847550 | + | 146 | - | - | Antitoxin |
| - | 2847412..2847515 | - | 104 | - | - | Toxin |
| M0769_RS13810 (M0769_13805) | 2847654..2847992 | - | 339 | WP_008500468.1 | YebY family protein | - |
| M0769_RS13815 (M0769_13810) | 2848009..2848878 | - | 870 | WP_181531373.1 | copper homeostasis membrane protein CopD | - |
| M0769_RS13820 (M0769_13815) | 2848880..2849251 | - | 372 | WP_069598484.1 | CopC domain-containing protein YobA | - |
| M0769_RS13825 (M0769_13820) | 2849389..2849619 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| M0769_RS13830 (M0769_13825) | 2849730..2850380 | + | 651 | WP_032675034.1 | carbon-nitrogen hydrolase family protein | - |
| M0769_RS13835 (M0769_13830) | 2850405..2851067 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T242829 NZ_CP096187:c2847515-2847412 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT242829 NZ_CP096187:2847405-2847550 [Enterobacter roggenkampii]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
