Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2112257..2112528 | Replicon | chromosome |
| Accession | NC_013353 | ||
| Organism | Escherichia coli O103:H2 str. 12009 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2112295..2112398 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2112257..2112528 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECO103_RS10610 | 2109414..2110853 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECO103_RS10615 | 2110971..2111207 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECO103_RS10620 | 2111312..2111503 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECO103_RS10625 | 2111504..2112160 | - | 657 | WP_000812707.1 | protein-serine/threonine phosphatase | - |
| - | 2112257..2112528 | + | 272 | - | - | Antitoxin |
| - | 2112295..2112398 | - | 104 | - | - | Toxin |
| ECO103_RS10635 | 2112556..2112897 | - | 342 | WP_000976472.1 | YebY family protein | - |
| ECO103_RS10640 | 2112910..2113782 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| ECO103_RS10645 | 2113786..2114160 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| ECO103_RS10650 | 2114299..2114529 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECO103_RS10655 | 2114631..2115287 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ECO103_RS10660 | 2115311..2115973 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T24281 NC_013353:c2112398-2112295 [Escherichia coli O103:H2 str. 12009]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT24281 NC_013353:2112257-2112528 [Escherichia coli O103:H2 str. 12009]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
