242722

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) spoIISABC/SpoIISA-SpoIISB
Location 1223199..1224116 Replicon chromosome
Accession NZ_CP096033
Organism Bacillus amyloliquefaciens strain GL18

Toxin (Protein)


Gene name spoIISA Uniprot ID -
Locus tag MY487_RS06465 Protein ID WP_012117368.1
Coordinates 1223370..1224116 (-) Length 249 a.a.

Antitoxin (Protein)


Gene name spoIISB Uniprot ID I2HQ14
Locus tag MY487_RS06460 Protein ID WP_003154807.1
Coordinates 1223199..1223369 (-) Length 57 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MY487_RS06410 (MY487_06410) 1218333..1218845 + 513 WP_012117362.1 sigma-70 family RNA polymerase sigma factor -
MY487_RS06415 (MY487_06415) 1218958..1219191 + 234 WP_012117363.1 XtmA -
MY487_RS06420 (MY487_06420) 1219207..1220055 + 849 WP_012117364.1 hypothetical protein -
MY487_RS06425 (MY487_06425) 1220068..1220439 + 372 WP_012117365.1 XkdW family protein -
MY487_RS06430 (MY487_06430) 1220444..1220641 + 198 WP_012117366.1 XkdX family protein -
MY487_RS06435 (MY487_06435) 1220698..1221459 + 762 WP_012117367.1 hypothetical protein -
MY487_RS06440 (MY487_06440) 1221511..1221774 + 264 WP_003154815.1 hemolysin XhlA family protein -
MY487_RS06445 (MY487_06445) 1221788..1222051 + 264 WP_003154813.1 phage holin -
MY487_RS06450 (MY487_06450) 1222065..1222943 + 879 WP_007407257.1 N-acetylmuramoyl-L-alanine amidase -
MY487_RS06460 (MY487_06460) 1223199..1223369 - 171 WP_003154807.1 type II toxin-antitoxin system SpoIISB family antitoxin Antitoxin
MY487_RS06465 (MY487_06465) 1223370..1224116 - 747 WP_012117368.1 type II toxin-antitoxin system SpoIISA family toxin Toxin
MY487_RS06470 (MY487_06470) 1224221..1225219 - 999 WP_007407255.1 inorganic phosphate transporter -
MY487_RS06475 (MY487_06475) 1225232..1225849 - 618 WP_003154804.1 DUF47 domain-containing protein -
MY487_RS06480 (MY487_06480) 1226135..1227451 - 1317 WP_007610842.1 amino acid permease -
MY487_RS06485 (MY487_06485) 1227774..1228724 + 951 WP_012117369.1 ring-cleaving dioxygenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin SpoIISA, type II toxin-antitoxin system

(3-239)

Antitoxin

Antitoxin SpoIISB

(1-56)


Sequences

Toxin        


Download         Length: 249 a.a.        Molecular weight: 29119.61 Da        Isoelectric Point: 4.7003

>T242722 WP_012117368.1 NZ_CP096033:c1224116-1223370 [Bacillus amyloliquefaciens]
MLLFFQIMVWTMAAALILYVYASWRYEAKVKEKMFAIRKTWYLLFVLGSMVYWTYDPESLFAEWRQYLIVAVCFALIDAF
IFLSAYIKKLAGNELETDTREILEENNEMLHSYLEKLKTYQYLLKNEPIHVYYGSTEAYAEGISRLLAAYAEKMNVTASL
CDYSAQADKDRLTEHMPDAADVQSRLNRKDVYYDQKGRLVLIPFTVQNRHYVIKLTSENLLTEFDYLLFTSLTSIYDLML
PIEEEGDG

Download         Length: 747 bp

>T242722 NZ_OW967003:1041511-1041618 [Escherichia coli]
ATGACGCTCGCGCAGTTTGCCATGACTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATTACCGCAGTGAT
TGTCAGCTGGTGGCGTAACCGGAAGTAA

Antitoxin


Download         Length: 57 a.a.        Molecular weight: 6676.74 Da        Isoelectric Point: 10.9273

>AT242722 WP_003154807.1 NZ_CP096033:c1223369-1223199 [Bacillus amyloliquefaciens]
MEQAFQNGQPEQRAKPFKMFKKRSMTSIASYQVSPHTARIFKENERLIDKYKQKKA

Download         Length: 171 bp

>AT242722 NZ_OW967003:c1041461-1041404 [Escherichia coli]
TCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTGTACCTCTCAACGTGCGGGGG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB I2HQ14

References