Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 2766678..2767203 Replicon chromosome
Accession NZ_CP096018
Organism Alkalimarinus coralli strain SCSIO 12817

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag MY525_RS12490 Protein ID WP_250656208.1
Coordinates 2766919..2767203 (+) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag MY525_RS12485 Protein ID WP_250656207.1
Coordinates 2766678..2766929 (+) Length 84 a.a.

Genomic Context

MY525_RS12460MY525_RS12465MY525_RS12470MY525_RS12485MY525_RS12490MY525_RS12500MY525_RS12505MY525_RS12510MY525_RS12515MY525_RS12455MY525_RS12475MY525_RS12480MY525_RS12495
Location: 2763281..2764000 (720 bp)
Type: Others
Protein ID: WP_250656202.1
Location: 2764220..2764885 (666 bp)
Type: Others
Protein ID: WP_250656203.1
Location: 2764977..2765231 (255 bp)
Type: Others
Protein ID: WP_250656204.1
Location: 2766678..2766929 (252 bp)
Type: Antitoxin
Protein ID: WP_250656207.1
Location: 2766919..2767203 (285 bp)
Type: Toxin
Protein ID: WP_250656208.1
Location: 2769019..2769513 (495 bp)
Type: Others
Protein ID: WP_250656210.1
Location: 2769729..2770136 (408 bp)
Type: Others
Protein ID: WP_250656211.1
Location: 2770222..2771250 (1029 bp)
Type: Others
Protein ID: WP_250656212.1
Location: 2771325..2771987 (663 bp)
Type: Others
Protein ID: WP_250656213.1
Location: 2762204..2763112 (909 bp)
Type: Others
Protein ID: WP_250656201.1
Location: 2765265..2765918 (654 bp)
Type: Others
Protein ID: WP_250656205.1
Location: 2766085..2766450 (366 bp)
Type: Others
Protein ID: WP_250656206.1
Location: 2767291..2768823 (1533 bp)
Type: Others
Protein ID: WP_250656209.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
MY525_RS124552762204..2763112-909WP_250656201.1LysR family transcriptional regulator-
MY525_RS124602763281..2764000+720WP_250656202.1glutathione S-transferase family protein-
MY525_RS124652764220..2764885+666WP_250656203.1SDR family oxidoreductase-
MY525_RS124702764977..2765231+255WP_250656204.1hypothetical protein-
MY525_RS124752765265..2765918-654WP_250656205.1CBS domain-containing protein-
MY525_RS124802766085..2766450-366WP_250656206.1YbaN family protein-
MY525_RS124852766678..2766929+252WP_250656207.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
MY525_RS124902766919..2767203+285WP_250656208.1type II toxin-antitoxin system RelE/ParE family toxinToxin
MY525_RS124952767291..2768823-1533WP_250656209.1methyl-accepting chemotaxis protein-
MY525_RS125002769019..2769513+495WP_250656210.1peptidylprolyl isomerase-
MY525_RS125052769729..2770136+408WP_250656211.1GFA family protein-
MY525_RS125102770222..2771250+1029WP_250656212.1DUF2157 domain-containing protein-
MY525_RS125152771325..2771987+663WP_250656213.1YoaK family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-82)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(11-77)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10847.91 Da        Isoelectric Point: 10.7024

>T242716 WP_250656208.1 NZ_CP096018:2766919-2767203 [Alkalimarinus coralli]
MTYKLKFLPAALKEWKKLASPIQSQFKKKLSERLENPRVPSAKLSGFDSVYKIKLRTAGYRLAYEVVDDEVVVYVLVVGK
RDKGKVYQKLKGRI

Download         Length: 285 bp

>T242716 NZ_OW849528:c168788-168330 [Citrobacter freundii]
GTGATCCTTTACCGACTGACCAAGACCCGTTATCTGATGACTGCGTGGTCTGGTCTGGGTGCGAAAGAAGCGGGGGGCCG
CTGGAACAGCGTAGGCACTGCAATGGTCTACCTGTCTGAAACGGCCAGCCTTACCATGCTTGAAACGCTGGTACACATTC
ACGCGCCGCAGTTACTGGACGACTTTACACTGCTGAGTCTTGATGTACCGGATGATCAGATCCAGACCTTCGACATGAGC
CGTCTCCCTGATAACTGGGCGAGTGAGGATGCTCCTGCTGAGCTGGCGCTCTACGGTGATAACTGGGCTGAAAGCGGTTC
TTCTATCGCGCTGCGTATTCCAAGTGCGTTGTCTCCGGTTGAATTTAACTACTTGCTGAATCCGGCACACCCTGAACTCT
TTGACCTGATGGCTACGGTTAAGAAAATTCCGTTCCGGTTTGATTCCCGCCTGAAATAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9152.48 Da        Isoelectric Point: 4.2813

>AT242716 WP_250656207.1 NZ_CP096018:2766678-2766929 [Alkalimarinus coralli]
MRQVLADCSASISELKKNPTALLNESAGAPIAILNHNKPAAYLVPAETYEWLMDMLDDQELAKLVEQRVAKKDQAVEVSL
DDL

Download         Length: 252 bp

>AT242716 NZ_OW849528:c169231-168785 [Citrobacter freundii]
ATGACGATGAAAGTTTTTTCTCCAGACGTTACCAAAACGAATCAGCACTGCTTATGGCAGGTTGCTGGGCTGGATAATGA
CGGTATCGCGCTGATGGATAAAATCAATCACGGTCTCGATGGCACAGTAGCTAAGCACATTTCTGAATGGGCTAACATCA
CGCCGTCTGAGCTGCGCAAAATGTCGGGTATACCTAATACGACGTTTAATCGTAGCATCAAAGACCGTTTCACTGCCGAT
CAGAGCGAACGTCTGGTGCGCATTATCCGCGTAATTGAACGCGCTGTAGAGCTGTTTGAAGGTGACAAAGAAGCGGCGCA
CAAATGGCTGAACGAAGCGAACCGTGGTCTGAGCTGGAAATCACCGGCAGAGCTTGTTTCTTCTGAGACAGGTGCGCTTG
AAGTGATGCGCCTGATTACGCGTATTGAGCACGGGGTATACTCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References