Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 2766380..2766905 Replicon chromosome
Accession NZ_CP096017
Organism Alkalimarinus coralli strain SCSIO 12638

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag MY524_RS12485 Protein ID WP_250656208.1
Coordinates 2766621..2766905 (+) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag MY524_RS12480 Protein ID WP_250656207.1
Coordinates 2766380..2766631 (+) Length 84 a.a.

Genomic Context

MY524_RS12455MY524_RS12460MY524_RS12465MY524_RS12480MY524_RS12485MY524_RS12495MY524_RS12500MY524_RS12505MY524_RS12510MY524_RS12450MY524_RS12470MY524_RS12475MY524_RS12490
Location: 2762983..2763702 (720 bp)
Type: Others
Protein ID: WP_250656202.1
Location: 2763922..2764587 (666 bp)
Type: Others
Protein ID: WP_250656203.1
Location: 2764679..2764933 (255 bp)
Type: Others
Protein ID: WP_250656204.1
Location: 2766380..2766631 (252 bp)
Type: Antitoxin
Protein ID: WP_250656207.1
Location: 2766621..2766905 (285 bp)
Type: Toxin
Protein ID: WP_250656208.1
Location: 2768721..2769215 (495 bp)
Type: Others
Protein ID: WP_250656210.1
Location: 2769431..2769838 (408 bp)
Type: Others
Protein ID: WP_250656211.1
Location: 2769924..2770952 (1029 bp)
Type: Others
Protein ID: WP_250656212.1
Location: 2771027..2771689 (663 bp)
Type: Others
Protein ID: WP_250656213.1
Location: 2761906..2762814 (909 bp)
Type: Others
Protein ID: WP_250656201.1
Location: 2764967..2765620 (654 bp)
Type: Others
Protein ID: WP_250656205.1
Location: 2765787..2766152 (366 bp)
Type: Others
Protein ID: WP_250656206.1
Location: 2766993..2768525 (1533 bp)
Type: Others
Protein ID: WP_250656209.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
MY524_RS124502761906..2762814-909WP_250656201.1LysR family transcriptional regulator-
MY524_RS124552762983..2763702+720WP_250656202.1glutathione S-transferase family protein-
MY524_RS124602763922..2764587+666WP_250656203.1SDR family oxidoreductase-
MY524_RS124652764679..2764933+255WP_250656204.1hypothetical protein-
MY524_RS124702764967..2765620-654WP_250656205.1CBS domain-containing protein-
MY524_RS124752765787..2766152-366WP_250656206.1YbaN family protein-
MY524_RS124802766380..2766631+252WP_250656207.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
MY524_RS124852766621..2766905+285WP_250656208.1type II toxin-antitoxin system RelE/ParE family toxinToxin
MY524_RS124902766993..2768525-1533WP_250656209.1methyl-accepting chemotaxis protein-
MY524_RS124952768721..2769215+495WP_250656210.1peptidylprolyl isomerase-
MY524_RS125002769431..2769838+408WP_250656211.1GFA family protein-
MY524_RS125052769924..2770952+1029WP_250656212.1DUF2157 domain-containing protein-
MY524_RS125102771027..2771689+663WP_250656213.1YoaK family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-82)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(11-77)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10847.91 Da        Isoelectric Point: 10.7024

>T242705 WP_250656208.1 NZ_CP096017:2766621-2766905 [Alkalimarinus coralli]
MTYKLKFLPAALKEWKKLASPIQSQFKKKLSERLENPRVPSAKLSGFDSVYKIKLRTAGYRLAYEVVDDEVVVYVLVVGK
RDKGKVYQKLKGRI

Download         Length: 285 bp

>T242705 NZ_OW849527:34610-34972 [Citrobacter freundii]
ATGTGGGAAGTGGAAACAACGGATGCTTTCGATAAATGGTTTGACGTACAGACCGAAGCGCTCAAGGAAGATATGCTCGC
AGCAATGATGATTTTATCCGAGTATGGTCCTCAGTTAGGCAGGCCGTTTGCTGATACGGTAAATGCTTCTGCTTTTTCAA
ATATGAAAGAGTTGCGAGTACAGCATCAGGGTAGTCCGATTCGGGCGTTCTTCGCGTTTGATCCTTCTCGCCATGGCATC
GTGCTATGCGCTGGAGATAAAACAGGGTTAAACGAAAAGAAATTCTATAAAGAGATGATCAGGCTTGCGGATGCTGAGTA
CCGAAATCACCTAATAAGTAAGGAAAATTATGGCTACCCTTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9152.48 Da        Isoelectric Point: 4.2813

>AT242705 WP_250656207.1 NZ_CP096017:2766380-2766631 [Alkalimarinus coralli]
MRQVLADCSASISELKKNPTALLNESAGAPIAILNHNKPAAYLVPAETYEWLMDMLDDQELAKLVEQRVAKKDQAVEVSL
DDL

Download         Length: 252 bp

>AT242705 NZ_OW849527:34959-35258 [Citrobacter freundii]
ATGGCTACCCTTAAAGAATTGATGGCGAAACAAAGCCCGGAAAGCCAGGAGCGTATTACCGAAAAAGTAGAAATACTACG
TCAGGCGGTTGCGTTAAATATGTTAAGGGAAGAACTGAATCTCTCTCAGGCTGAACTTGCCTCGGCAATGGGGGTTAAGC
AGCCAACAATCGCAAAAATGGAGCAGGCAGATAACGATCCTCGTCTGTCGACGCTCAAGCGTTATGTCACGGCACTGGGT
GGTGAACTTAGCATTGATGTTAAGCTACCTACAGGTAAAAGAGTCGCGTTCTATCTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References