Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 1200181..1200737 Replicon chromosome
Accession NZ_CP096017
Organism Alkalimarinus coralli strain SCSIO 12638

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag MY524_RS05295 Protein ID WP_250654857.1
Coordinates 1200181..1200492 (-) Length 104 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag MY524_RS05300 Protein ID WP_250654858.1
Coordinates 1200480..1200737 (-) Length 86 a.a.

Genomic Context

MY524_RS05275MY524_RS05280MY524_RS05285MY524_RS05290MY524_RS05315MY524_RS05320MY524_RS05295MY524_RS05300MY524_RS05305MY524_RS05310MY524_RS05325MY524_RS05330MY524_RS05335
Location: 1195921..1196940 (1020 bp)
Type: Others
Protein ID: WP_250654853.1
Location: 1196937..1197419 (483 bp)
Type: Others
Protein ID: WP_250654854.1
Location: 1197416..1198258 (843 bp)
Type: Others
Protein ID: WP_250654855.1
Location: 1198357..1199985 (1629 bp)
Type: Others
Protein ID: WP_250654856.1
Location: 1201869..1202105 (237 bp)
Type: Others
Protein ID: WP_250654861.1
Location: 1202110..1202421 (312 bp)
Type: Others
Protein ID: WP_250654862.1
Location: 1200181..1200492 (312 bp)
Type: Toxin
Protein ID: WP_250654857.1
Location: 1200480..1200737 (258 bp)
Type: Antitoxin
Protein ID: WP_250654858.1
Location: 1200819..1201070 (252 bp)
Type: Others
Protein ID: WP_250654859.1
Location: 1201060..1201323 (264 bp)
Type: Others
Protein ID: WP_250654860.1
Location: 1202682..1202984 (303 bp)
Type: Others
Protein ID: WP_250654863.1
Location: 1202981..1203259 (279 bp)
Type: Others
Protein ID: WP_250654864.1
Location: 1203850..1204320 (471 bp)
Type: Others
Protein ID: WP_250654865.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
MY524_RS052751195921..1196940+1020WP_250654853.1PhoH family protein-
MY524_RS052801196937..1197419+483WP_250654854.1rRNA maturation RNase YbeY-
MY524_RS052851197416..1198258+843WP_250654855.1transporter associated domain-containing protein-
MY524_RS052901198357..1199985+1629WP_250654856.1apolipoprotein N-acyltransferase-
MY524_RS052951200181..1200492-312WP_250654857.1type II toxin-antitoxin system RelE/ParE family toxinToxin
MY524_RS053001200480..1200737-258WP_250654858.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
MY524_RS053051200819..1201070-252WP_250654859.1CopG family transcriptional regulator-
MY524_RS053101201060..1201323-264WP_250654860.1BrnT family toxin-
MY524_RS053151201869..1202105+237WP_250654861.1addiction module protein-
MY524_RS053201202110..1202421+312WP_250654862.1type II toxin-antitoxin system RelE/ParE family toxin-
MY524_RS053251202682..1202984-303WP_250654863.1hypothetical protein-
MY524_RS053301202981..1203259-279WP_250654864.1BrnT family toxin-
MY524_RS053351203850..1204320-471WP_250654865.1GNAT family N-acetyltransferase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideIntegron--1198357..12029844627


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-91)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-70)


Sequences

Toxin        


Download         Length: 104 a.a.        Molecular weight: 11937.56 Da        Isoelectric Point: 4.5858

>T242701 WP_250654857.1 NZ_CP096017:c1200492-1200181 [Alkalimarinus coralli]
MAQIIWTEPALNDLNDIAEYIAVSNPYAAKQLVENVFSNVQRLEQFPDSGRVPDEISNLNYREVVVNPCRVFYKIDMDSV
YILHVMRQERDLRKFLLSTTNGS

Download         Length: 312 bp

>T242701 NZ_OW849470:c4607733-4607476 [Klebsiella oxytoca]
ATGAATCTATCCCGTCAGGAACAACGTACCTTACACGTTCTCGCTAAAGGTGGCCGGATCGCGCATATTCGCGATGCATC
AGGCCGCGTAATCTCTGTTGAATGCTACAGCCGCGAAGGGCTCCTGCTCAGCGACTGCACGCTCGCCGTTTTCAAAAAAC
TCAAAACCAAAAAACTCATTAAGTCCGTCAACGGGCAGCCCTACCGTATCAATACCACCGGGCTGAACAACGTTCGCGCT
CAGCTGGACAACCGCTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9713.35 Da        Isoelectric Point: 8.5371

>AT242701 WP_250654858.1 NZ_CP096017:c1200737-1200480 [Alkalimarinus coralli]
MRTEVVTTLKRQATKLLADLHESKEPILITEHGQPSAYLLDVADYELMVNRMKILEGIAKGEQAIRDGRTMDMGQAKDKM
NKWLK

Download         Length: 258 bp

>AT242701 NZ_OW849470:c4607465-4606914 [Klebsiella oxytoca]
ATGACAAACCATAACTTCACCTTTCACATCACCTCAGAGCGTGATGCTGATGATATTCGCGAAGTTGAAACCCGGGCCTT
CGGCTTTAGCAAAGAGGCCGATCTGGTTGCCGATTTGCTCAACGATGAAAGTGCTCACCCGAGCTTATCTCTGCTGGCCA
AACATAATGGAAAAGCAGTTGGGCATATTTTGTTCACCCTGGCGACGTTCAAAGGGGAGTCTGACTCTCCGATGATGCAT
ATCCTTGCCCCCCTGGCGGTGGTGCCGGAATACCAGGGCGTGGGCGTAGGCGGATTGCTTATCCAGCGCGGTATTGAGCA
TCTGAAAGCCGCAGGAAGCGAGGCGGTATTTGTTCTGGGACATGCCGCTTATTACCCGCGGCATGGCTTTGAACCCTGTG
CCGGAGATAAAGGCTATCCGGCGCCTTATCCCATTCCCGAGGAGCATAAAGCCTGCTGGATGCTGCAGCGGCTTTCGTCC
CGGCCGCTGGGGAGAATCGGTCAGATACAGTGCGCCCGGGCGTTAATGAAACCCGAGCACTGGCGCGAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
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Antitoxin

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Source
ID
Structure
No matching records found

References