Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 183995..184561 Replicon chromosome
Accession NZ_CP096017
Organism Alkalimarinus coralli strain SCSIO 12638

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag MY524_RS00840 Protein ID WP_250658091.1
Coordinates 183995..184279 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag MY524_RS00845 Protein ID WP_250658092.1
Coordinates 184283..184561 (-) Length 93 a.a.

Genomic Context

MY524_RS00810MY524_RS00815MY524_RS00820MY524_RS00830MY524_RS00835MY524_RS00850MY524_RS00855MY524_RS00840MY524_RS00845MY524_RS00860MY524_RS00865MY524_RS00870
Location: 179711..179941 (231 bp)
Type: Others
Protein ID: WP_250658085.1
Location: 179941..180333 (393 bp)
Type: Others
Protein ID: WP_250658086.1
Location: 180623..181171 (549 bp)
Type: Others
Protein ID: WP_250658087.1
Location: 182536..182955 (420 bp)
Type: Others
Protein ID: WP_250658089.1
Location: 183295..183777 (483 bp)
Type: Others
Protein ID: WP_250658090.1
Location: 184902..185405 (504 bp)
Type: Others
Protein ID: WP_250658093.1
Location: 185472..185843 (372 bp)
Type: Others
Protein ID: WP_250658094.1
Location: 183995..184279 (285 bp)
Type: Toxin
Protein ID: WP_250658091.1
Location: 184283..184561 (279 bp)
Type: Antitoxin
Protein ID: WP_250658092.1
Location: 186054..187010 (957 bp)
Type: Others
Protein ID: WP_250658095.1
Location: 187064..187468 (405 bp)
Type: Others
Protein ID: WP_250658096.1
Location: 187783..189231 (1449 bp)
Type: Others
Protein ID: WP_250658097.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
MY524_RS00810179711..179941+231WP_250658085.1hypothetical protein-
MY524_RS00815179941..180333+393WP_250658086.1type II toxin-antitoxin system VapC family toxin-
MY524_RS00820180623..181171+549WP_250658087.1hypothetical protein-
MY524_RS00830182536..182955+420WP_250658089.1hypothetical protein-
MY524_RS00835183295..183777+483WP_250658090.1hypothetical protein-
MY524_RS00840183995..184279-285WP_250658091.1type II toxin-antitoxin system RelE/ParE family toxinToxin
MY524_RS00845184283..184561-279WP_250658092.1type II toxin-antitoxin system RelB/DinJ family antitoxinAntitoxin
MY524_RS00850184902..185405+504WP_250658093.1hypothetical protein-
MY524_RS00855185472..185843+372WP_250658094.1helix-turn-helix domain-containing protein-
MY524_RS00860186054..187010-957WP_250658095.1PA2778 family cysteine peptidase-
MY524_RS00865187064..187468-405WP_250658096.1PA2779 family protein-
MY524_RS00870187783..189231-1449WP_250658097.1aldehyde dehydrogenase family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-89)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(5-44)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 11183.95 Da        Isoelectric Point: 6.4718

>T242699 WP_250658091.1 NZ_CP096017:c184279-183995 [Alkalimarinus coralli]
VIYWEEESLNDRERIFEFLYDFNPIAAEKTDKIIEEKVENLHQQPLMGVQRGGIQGRLLVIPEISMIVSYWTDNTVIRVM
RVLHQKQKFPAKRP

Download         Length: 285 bp

>T242699 NZ_OW849470:2195825-2195928 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10885.07 Da        Isoelectric Point: 7.8949

>AT242699 WP_250658092.1 NZ_CP096017:c184561-184283 [Alkalimarinus coralli]
MDTRVQFRIDEETKRLAQQRTESQGRTLSDACRELTEQLADQQRKATSHDAWLTEQVNLAFEKFQTNRSTFVEHEHAKSS
MSERKAKIRERC

Download         Length: 279 bp

>AT242699 NZ_OW849470:c2195935-2195790 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References