Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/YoeB-YefM
Location 4333598..4334103 Replicon chromosome
Accession NZ_CP096016
Organism Alkalimarinus coralli strain SCSIO 12582

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag MY523_RS19545 Protein ID WP_250656356.1
Coordinates 4333598..4333855 (-) Length 86 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag MY523_RS19550 Protein ID WP_250656357.1
Coordinates 4333852..4334103 (-) Length 84 a.a.

Genomic Context

MY523_RS19520MY523_RS19540MY523_RS19555MY523_RS19560MY523_RS19565MY523_RS19570MY523_RS19525MY523_RS19530MY523_RS19535MY523_RS19545MY523_RS19550MY523_RS19575MY523_RS19580MY523_RS19585
Location: 4329070..4330047 (978 bp)
Type: Others
Protein ID: WP_250656351.1
Location: 4333189..4333371 (183 bp)
Type: Others
Protein ID: WP_250656355.1
Location: 4334589..4334855 (267 bp)
Type: Others
Protein ID: WP_250656358.1
Location: 4334852..4335139 (288 bp)
Type: Others
Protein ID: WP_250656359.1
Location: 4335217..4335474 (258 bp)
Type: Others
Protein ID: WP_250656360.1
Location: 4335539..4335679 (141 bp)
Type: Others
Protein ID: WP_250656361.1
Location: 4330136..4332199 (2064 bp)
Type: Others
Protein ID: WP_250656352.1
Location: 4332419..4332784 (366 bp)
Type: Others
Protein ID: WP_250656353.1
Location: 4332789..4333055 (267 bp)
Type: Others
Protein ID: WP_250656354.1
Location: 4333598..4333855 (258 bp)
Type: Toxin
Protein ID: WP_250656356.1
Location: 4333852..4334103 (252 bp)
Type: Antitoxin
Protein ID: WP_250656357.1
Location: 4335865..4336593 (729 bp)
Type: Others
Protein ID: WP_250658854.1
Location: 4336648..4337754 (1107 bp)
Type: Others
Protein ID: WP_250656362.1
Location: 4337765..4338976 (1212 bp)
Type: Others
Protein ID: WP_250656363.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
MY523_RS195204329070..4330047+978WP_250656351.1putative DNA binding domain-containing protein-
MY523_RS195254330136..4332199-2064WP_250656352.1MFS transporter-
MY523_RS195304332419..4332784-366WP_250656353.1type II toxin-antitoxin system RelE/ParE family toxin-
MY523_RS195354332789..4333055-267WP_250656354.1hypothetical protein-
MY523_RS195404333189..4333371+183WP_250656355.1hypothetical protein-
MY523_RS195454333598..4333855-258WP_250656356.1Txe/YoeB family addiction module toxinToxin
MY523_RS195504333852..4334103-252WP_250656357.1YoeB-YefM toxin-antitoxin system antitoxin YefMAntitoxin
MY523_RS195554334589..4334855+267WP_250656358.1ribbon-helix-helix protein, CopG family-
MY523_RS195604334852..4335139+288WP_250656359.1type II toxin-antitoxin system RelE/ParE family toxin-
MY523_RS195654335217..4335474+258WP_250656360.1hypothetical protein-
MY523_RS195704335539..4335679+141WP_250656361.1hypothetical protein-
MY523_RS195754335865..4336593-729WP_250658854.1amino acid ABC transporter ATP-binding protein-
MY523_RS195804336648..4337754-1107WP_250656362.1amino acid ABC transporter permease-
MY523_RS195854337765..4338976-1212WP_250656363.1ABC transporter permease subunit-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 10246.82 Da        Isoelectric Point: 10.0297

>T242696 WP_250656356.1 NZ_CP096016:c4333855-4333598 [Alkalimarinus coralli]
MKVTFSSAAWDQYLYWQTTDKKILKRINQLIKDIKREPYEGIGKPEPLKHGLAGYWSRRINDEHRIVYKYTEGTILIAQL
RYHYT

Download         Length: 258 bp

>T242696 NZ_OW849470:83870-84445 [Klebsiella oxytoca]
ATGCGACATTCACCTTATCCGGTGATTTTAGATGCCTGTGTGTTATATCCGGCACGACTCAGAGATTTGCTGATGCACCT
GGGGATTGCCGGGCTGTATCAACCAAAATGGAGCCGCTGCATTCAGGATGAATGGTGCAGAAACTTGATTGCTAATCGGC
CTGACATTCTGCCAGAGACGCTTCAGCGTACTGTCAAAATGATGAATTCCGCCTTACCAGATGCCAATGTTACGGGATAT
AAGGGATTAATAAGTAATCTGCATCTGCCGGATCCCAACGACAGACATGTTCTTGCCGCAGCGATAAGAGCGAAAGCTGA
AATTATTGTAACGCTTAACCATAAGAACTTTCCGCCAGAACTTCTGGGTCCATATGAAATAGAAACGCTTCACCCTGATG
CGTTTATTTCCGATCTCTTCGATCTTAATCATGCTCTGACGCTTGAAGCCGTCAGGCGGCAGCGACTGTCTCTAAAACAT
CCATCTATGGCGGTCGATGAATTTCTTGAAATGCTGCTAAAGCAGGGTTTACCGATGACGGTAAAGGAATTAGCGCATTA
TCAGTATGCTATTTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9316.54 Da        Isoelectric Point: 4.4737

>AT242696 WP_250656357.1 NZ_CP096016:c4334103-4333852 [Alkalimarinus coralli]
MDAISYTHARANLSSTMEKVCNDHAPIIITRKSESPVVMMSLEDYQAMEETTYLLRSPANARQLLESIAELESGKGTERE
LLE

Download         Length: 252 bp

>AT242696 NZ_OW849470:83415-83870 [Klebsiella oxytoca]
ATGACTACACTGACTCATCTCAACCTTCCCGATCGCCAGGAGAGCGAACTTGCGCAGCGCGGACAGCGTGAGCTTGCGGC
GTATCTTTCCACCAGGCTGGAAACACAGCGTATTGCCATTGTAGGAGAGGATGATAAAGCTCATACCATAGAGCTACCTA
CAAGTGCGCTGACATTGCTGATGGAGATATTGGGGGAGTTGGCTAGCGGAAATGCGGTACAAATCGTTCCCGTACATGCG
GAACTCACAACCCAGGAGGCGGCAAATATACTCAATGTCTCTCGTCCGCATATGGTTAAGCTCCTGGAAGCGAGGAAGCT
CCCATTTCATAAAACGGGGCGTCATCGCAGAGTGTTGTTTGCCGATCTTATGGAGTATAAGAAACGCAGGGAACAGGAGA
GCCTGGACGCGATGCAATCATTGGCCGATCAGGCGCAGGACTTAGGGATGTATTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References