Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 959804..960075 | Replicon | chromosome |
| Accession | NZ_CP095856 | ||
| Organism | Escherichia coli strain EC6563 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 959842..959945 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 959804..960075 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MYG04_RS04800 | 956961..958400 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MYG04_RS04805 | 958518..958754 | + | 237 | WP_001295499.1 | YebV family protein | - |
| MYG04_RS04810 | 958859..959050 | + | 192 | WP_001296140.1 | YebW family protein | - |
| MYG04_RS04815 | 959051..959707 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 959804..960075 | + | 272 | - | - | Antitoxin |
| - | 959842..959945 | - | 104 | - | - | Toxin |
| MYG04_RS04820 | 960102..960443 | - | 342 | WP_000976472.1 | YebY family protein | - |
| MYG04_RS04825 | 960456..961328 | - | 873 | WP_108429901.1 | copper homeostasis membrane protein CopD | - |
| MYG04_RS04830 | 961332..961706 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MYG04_RS04835 | 961845..962075 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MYG04_RS04840 | 962177..962833 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MYG04_RS04845 | 962857..963519 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T242631 NZ_CP095856:c959945-959842 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT242631 NZ_CP095856:959804-960075 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
