Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 222611..222879 | Replicon | chromosome |
| Accession | NZ_CP095786 | ||
| Organism | Escherichia fergusonii strain EF21JD053 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 222738..222841 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 222611..222879 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MYB88_RS01065 | 219161..219823 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| MYB88_RS01070 | 219847..220503 | - | 657 | WP_169710527.1 | carbon-nitrogen hydrolase family protein | - |
| MYB88_RS01075 | 220610..220840 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| MYB88_RS01080 | 220979..221353 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| MYB88_RS01085 | 221356..222228 | + | 873 | WP_169710526.1 | copper homeostasis membrane protein CopD | - |
| MYB88_RS01090 | 222240..222581 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 222611..222879 | - | 269 | - | - | Antitoxin |
| - | 222738..222841 | + | 104 | - | - | Toxin |
| MYB88_RS01095 | 222975..223631 | + | 657 | WP_000812708.1 | protein-serine/threonine phosphatase | - |
| MYB88_RS01100 | 223632..223823 | - | 192 | WP_002431587.1 | YebW family protein | - |
| MYB88_RS01105 | 223928..224164 | - | 237 | WP_002431586.1 | YebV family protein | - |
| MYB88_RS01110 | 224283..225722 | - | 1440 | WP_169710525.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T242554 NZ_CP095786:222738-222841 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT242554 NZ_CP095786:c222879-222611 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGTGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGTGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
