Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2247986..2248131 | Replicon | chromosome |
| Accession | NZ_CP095776 | ||
| Organism | Klebsiella pneumoniae strain bo714 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2248022..2248124 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2247986..2248131 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MX575_RS10890 (MX575_10890) | 2243116..2245176 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| MX575_RS10895 (MX575_10895) | 2245180..2245839 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| MX575_RS10900 (MX575_10900) | 2245918..2246148 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MX575_RS10905 (MX575_10905) | 2246261..2246635 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MX575_RS10910 (MX575_10910) | 2246639..2247508 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| MX575_RS10915 (MX575_10915) | 2247525..2247863 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2247986..2248131 | - | 146 | - | - | Antitoxin |
| - | 2248022..2248124 | + | 103 | - | - | Toxin |
| MX575_RS10920 (MX575_10920) | 2248499..2248642 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MX575_RS10925 (MX575_10925) | 2248747..2249715 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MX575_RS10930 (MX575_10930) | 2249872..2250525 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| MX575_RS10935 (MX575_10935) | 2250522..2250713 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MX575_RS10940 (MX575_10940) | 2250811..2251050 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MX575_RS10945 (MX575_10945) | 2251166..2252599 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T242536 NZ_CP095776:2248022-2248124 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT242536 NZ_CP095776:c2248131-2247986 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
