Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2200709..2200877 | Replicon | chromosome |
| Accession | NZ_CP095761 | ||
| Organism | Klebsiella michiganensis strain K254 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2200767..2200870 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2200709..2200877 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MMY93_RS10550 (MMY93_10550) | 2195836..2197896 | + | 2061 | WP_197664200.1 | oligopeptidase B | - |
| MMY93_RS10555 (MMY93_10555) | 2197903..2198562 | - | 660 | WP_004852093.1 | exodeoxyribonuclease X | - |
| MMY93_RS10560 (MMY93_10560) | 2198641..2198871 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| MMY93_RS10565 (MMY93_10565) | 2199007..2199381 | + | 375 | WP_004852090.1 | CopC domain-containing protein YobA | - |
| MMY93_RS10570 (MMY93_10570) | 2199386..2200255 | + | 870 | WP_004852088.1 | copper homeostasis membrane protein CopD | - |
| MMY93_RS10575 (MMY93_10575) | 2200272..2200610 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2200709..2200877 | - | 169 | - | - | Antitoxin |
| - | 2200767..2200870 | + | 104 | - | - | Toxin |
| MMY93_RS10580 (MMY93_10580) | 2200995..2201954 | - | 960 | WP_109212701.1 | spore coat protein U domain-containing protein | - |
| MMY93_RS10585 (MMY93_10585) | 2201969..2204299 | - | 2331 | WP_004852083.1 | fimbria/pilus outer membrane usher protein | - |
| MMY93_RS10590 (MMY93_10590) | 2204302..2205066 | - | 765 | WP_004852081.1 | fimbria/pilus periplasmic chaperone | - |
| MMY93_RS10595 (MMY93_10595) | 2205085..2205603 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T242467 NZ_CP095761:2200767-2200870 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT242467 NZ_CP095761:c2200877-2200709 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
