Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3149710..3149978 | Replicon | chromosome |
| Accession | NZ_CP095540 | ||
| Organism | Escherichia coli strain GN03204 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3149838..3149940 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3149710..3149978 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MW399_RS14940 | 3146263..3146925 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MW399_RS14945 | 3146949..3147605 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MW399_RS14950 | 3147707..3147937 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MW399_RS14955 | 3148076..3148450 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MW399_RS14960 | 3148454..3149326 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| MW399_RS14965 | 3149339..3149680 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3149710..3149978 | - | 269 | - | - | Antitoxin |
| - | 3149838..3149940 | + | 103 | - | - | Toxin |
| MW399_RS14970 | 3150075..3150731 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| MW399_RS14975 | 3150732..3150923 | - | 192 | WP_001296140.1 | YebW family protein | - |
| MW399_RS14980 | 3151028..3151264 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MW399_RS14985 | 3151381..3152820 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T242392 NZ_CP095540:3149838-3149940 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT242392 NZ_CP095540:c3149978-3149710 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
