Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1828363..1828634 | Replicon | chromosome |
| Accession | NZ_CP095538 | ||
| Organism | Escherichia coli strain GN04592 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1828493..1828596 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1828363..1828634 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MW396_RS08670 | 1824918..1825580 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MW396_RS08675 | 1825604..1826260 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MW396_RS08680 | 1826362..1826592 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MW396_RS08685 | 1826731..1827105 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| MW396_RS08690 | 1827109..1827981 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| MW396_RS08695 | 1827994..1828335 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 1828363..1828634 | - | 272 | - | - | Antitoxin |
| - | 1828493..1828596 | + | 104 | - | - | Toxin |
| MW396_RS08700 | 1828731..1829387 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| MW396_RS08705 | 1829388..1829579 | - | 192 | WP_001296140.1 | YebW family protein | - |
| MW396_RS08710 | 1829684..1829920 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MW396_RS08715 | 1830038..1831477 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1821053..1844473 | 23420 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T242355 NZ_CP095538:1828493-1828596 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT242355 NZ_CP095538:c1828634-1828363 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
