Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3101501..3101772 | Replicon | chromosome |
| Accession | NZ_CP095533 | ||
| Organism | Escherichia coli strain GN02461 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3101539..3101642 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3101501..3101772 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MW400_RS14510 | 3098658..3100097 | + | 1440 | WP_024176277.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MW400_RS14515 | 3100215..3100451 | + | 237 | WP_001295499.1 | YebV family protein | - |
| MW400_RS14520 | 3100556..3100747 | + | 192 | WP_001296140.1 | YebW family protein | - |
| MW400_RS14525 | 3100748..3101404 | - | 657 | WP_000812713.1 | protein-serine/threonine phosphatase | - |
| - | 3101501..3101772 | + | 272 | - | - | Antitoxin |
| - | 3101539..3101642 | - | 104 | - | - | Toxin |
| MW400_RS14530 | 3101800..3102141 | - | 342 | WP_000976490.1 | YebY family protein | - |
| MW400_RS14535 | 3102154..3103026 | - | 873 | WP_000879329.1 | copper homeostasis membrane protein CopD | - |
| MW400_RS14540 | 3103030..3103404 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MW400_RS14545 | 3103543..3103773 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MW400_RS14550 | 3103875..3104531 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MW400_RS14555 | 3104555..3105217 | + | 663 | WP_000944239.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3085661..3109082 | 23421 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T242333 NZ_CP095533:c3101642-3101539 [Escherichia coli]
GGCAAGGCATCTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCATCTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT242333 NZ_CP095533:3101501-3101772 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGATGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGATGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
