Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2754543..2754811 | Replicon | chromosome |
| Accession | NZ_CP095529 | ||
| Organism | Escherichia coli strain GN06156 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2754581..2754684 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2754543..2754811 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MW397_RS13155 | 2751700..2753139 | + | 1440 | WP_032273503.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MW397_RS13160 | 2753257..2753493 | + | 237 | WP_001295499.1 | YebV family protein | - |
| MW397_RS13165 | 2753598..2753789 | + | 192 | WP_001296140.1 | YebW family protein | - |
| MW397_RS13170 | 2753790..2754446 | - | 657 | WP_029305541.1 | protein-serine/threonine phosphatase | - |
| - | 2754543..2754811 | + | 269 | - | - | Antitoxin |
| - | 2754581..2754684 | - | 104 | - | - | Toxin |
| MW397_RS13175 | 2754841..2755182 | - | 342 | WP_000976472.1 | YebY family protein | - |
| MW397_RS13180 | 2755195..2756067 | - | 873 | WP_000879329.1 | copper homeostasis membrane protein CopD | - |
| MW397_RS13185 | 2756071..2756445 | - | 375 | WP_000168745.1 | CopC domain-containing protein YobA | - |
| MW397_RS13190 | 2756584..2756814 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MW397_RS13195 | 2756916..2757572 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MW397_RS13200 | 2757596..2758258 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2746313..2778597 | 32284 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T242305 NZ_CP095529:c2754684-2754581 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT242305 NZ_CP095529:2754543-2754811 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
