Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1159067..1159338 | Replicon | chromosome |
| Accession | NZ_CP095526 | ||
| Organism | Escherichia coli strain GN05505 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1159197..1159300 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1159067..1159338 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MW395_RS06165 | 1155622..1156284 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MW395_RS06170 | 1156308..1156964 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MW395_RS06175 | 1157066..1157296 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MW395_RS06180 | 1157435..1157809 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| MW395_RS06185 | 1157813..1158685 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| MW395_RS06190 | 1158698..1159039 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 1159067..1159338 | - | 272 | - | - | Antitoxin |
| - | 1159197..1159300 | + | 104 | - | - | Toxin |
| MW395_RS06195 | 1159435..1160091 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| MW395_RS06200 | 1160092..1160283 | - | 192 | WP_001296140.1 | YebW family protein | - |
| MW395_RS06205 | 1160388..1160624 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MW395_RS06210 | 1160742..1162181 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1088396..1175177 | 86781 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T242248 NZ_CP095526:1159197-1159300 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT242248 NZ_CP095526:c1159338-1159067 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
