Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2761537..2761805 | Replicon | chromosome |
| Accession | NZ_CP095514 | ||
| Organism | Escherichia coli strain GN02323 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2761575..2761677 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2761537..2761805 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MW403_RS13405 | 2758694..2760133 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MW403_RS13410 | 2760251..2760487 | + | 237 | WP_001295499.1 | YebV family protein | - |
| MW403_RS13415 | 2760592..2760783 | + | 192 | WP_001317886.1 | YebW family protein | - |
| MW403_RS13420 | 2760784..2761440 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 2761537..2761805 | + | 269 | - | - | Antitoxin |
| - | 2761575..2761677 | - | 103 | - | - | Toxin |
| MW403_RS13425 | 2761835..2762176 | - | 342 | WP_000984819.1 | YebY family protein | - |
| MW403_RS13430 | 2762189..2763061 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| MW403_RS13435 | 2763065..2763439 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MW403_RS13440 | 2763578..2763808 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MW403_RS13445 | 2763911..2764567 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MW403_RS13450 | 2764591..2765253 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T242146 NZ_CP095514:c2761677-2761575 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT242146 NZ_CP095514:2761537-2761805 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
