Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2454499..2454770 | Replicon | chromosome |
| Accession | NZ_CP095510 | ||
| Organism | Escherichia coli strain GN02270 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2454629..2454732 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2454499..2454770 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MW401_RS11630 | 2451054..2451716 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MW401_RS11635 | 2451740..2452396 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MW401_RS11640 | 2452498..2452728 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MW401_RS11645 | 2452867..2453241 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| MW401_RS11650 | 2453245..2454117 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| MW401_RS11655 | 2454130..2454471 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2454499..2454770 | - | 272 | - | - | Antitoxin |
| - | 2454629..2454732 | + | 104 | - | - | Toxin |
| MW401_RS11660 | 2454867..2455523 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| MW401_RS11665 | 2455524..2455715 | - | 192 | WP_001296140.1 | YebW family protein | - |
| MW401_RS11670 | 2455820..2456056 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MW401_RS11675 | 2456174..2457613 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2447189..2470609 | 23420 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T242106 NZ_CP095510:2454629-2454732 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT242106 NZ_CP095510:c2454770-2454499 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
