Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 379766..380034 | Replicon | chromosome |
| Accession | NZ_CP095505 | ||
| Organism | Escherichia coli strain GN02050 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 379804..379906 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 379766..380034 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MW398_RS02835 | 376927..378366 | + | 1440 | WP_024187959.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MW398_RS02840 | 378484..378720 | + | 237 | WP_001295499.1 | YebV family protein | - |
| MW398_RS02845 | 378825..379004 | + | 180 | Protein_388 | YebW family protein | - |
| MW398_RS02850 | 379013..379669 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 379766..380034 | + | 269 | - | - | Antitoxin |
| - | 379804..379906 | - | 103 | - | - | Toxin |
| MW398_RS02855 | 380064..380405 | - | 342 | WP_000976472.1 | YebY family protein | - |
| MW398_RS02860 | 380418..381290 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| MW398_RS02865 | 381294..381668 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MW398_RS02870 | 381807..382037 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MW398_RS02875 | 382139..382795 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MW398_RS02880 | 382819..383481 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T242068 NZ_CP095505:c379906-379804 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT242068 NZ_CP095505:379766-380034 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
