Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2830972..2831243 | Replicon | chromosome |
| Accession | NZ_CP095448 | ||
| Organism | Escherichia coli strain LS45 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2831010..2831112 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2830972..2831243 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MWN28_RS13515 | 2828129..2829568 | + | 1440 | WP_024175799.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MWN28_RS13520 | 2829686..2829922 | + | 237 | WP_001295499.1 | YebV family protein | - |
| MWN28_RS13525 | 2830027..2830218 | + | 192 | WP_001296140.1 | YebW family protein | - |
| MWN28_RS13530 | 2830219..2830875 | - | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| - | 2830972..2831243 | + | 272 | - | - | Antitoxin |
| - | 2831010..2831112 | - | 103 | - | - | Toxin |
| MWN28_RS13535 | 2831271..2831612 | - | 342 | WP_000976474.1 | YebY family protein | - |
| MWN28_RS13540 | 2831625..2832496 | - | 872 | Protein_2664 | copper homeostasis membrane protein CopD | - |
| MWN28_RS13545 | 2832500..2832874 | - | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| MWN28_RS13550 | 2833013..2833243 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MWN28_RS13555 | 2833345..2834001 | + | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MWN28_RS13560 | 2834025..2834687 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T242017 NZ_CP095448:c2831112-2831010 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT242017 NZ_CP095448:2830972-2831243 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
