Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2430172..2430443 | Replicon | chromosome |
| Accession | NC_013008 | ||
| Organism | Escherichia coli O157:H7 str. TW14359 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2430210..2430313 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2430172..2430443 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECSP_RS12535 | 2427329..2428768 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECSP_RS12540 | 2428886..2429122 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECSP_RS12545 | 2429227..2429418 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECSP_RS12550 | 2429419..2430075 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2430172..2430443 | + | 272 | - | - | Antitoxin |
| - | 2430210..2430313 | - | 104 | - | - | Toxin |
| ECSP_RS12560 | 2430471..2430812 | - | 342 | WP_000976483.1 | YebY family protein | - |
| ECSP_RS12565 | 2430825..2431697 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| ECSP_RS12570 | 2431701..2432075 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| ECSP_RS12575 | 2432214..2432444 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECSP_RS12580 | 2432546..2433202 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| ECSP_RS12585 | 2433226..2433888 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T24192 NC_013008:c2430313-2430210 [Escherichia coli O157:H7 str. TW14359]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT24192 NC_013008:2430172-2430443 [Escherichia coli O157:H7 str. TW14359]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
