Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2842313..2842522 | Replicon | chromosome |
| Accession | NZ_CP095276 | ||
| Organism | Enterobacter hormaechei subsp. xiangfangensis strain HD8642 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2842326..2842429 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2842313..2842522 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MU851_RS13560 (MU851_13530) | 2838581..2840029 | + | 1449 | WP_196342646.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MU851_RS13565 (MU851_13535) | 2840136..2840375 | + | 240 | WP_003859885.1 | YebV family protein | - |
| MU851_RS13570 (MU851_13540) | 2840410..2841054 | - | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| MU851_RS13575 (MU851_13545) | 2841222..2842202 | + | 981 | WP_047057152.1 | VirK/YbjX family protein | - |
| MU851_RS13580 (MU851_13550) | 2842248..2842445 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2842313..2842522 | + | 210 | - | - | Antitoxin |
| - | 2842326..2842429 | - | 104 | - | - | Toxin |
| MU851_RS13585 (MU851_13555) | 2842571..2842909 | - | 339 | WP_003859787.1 | YebY family protein | - |
| MU851_RS13590 (MU851_13560) | 2842926..2843795 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| MU851_RS13595 (MU851_13565) | 2843797..2844168 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| MU851_RS13600 (MU851_13570) | 2844306..2844536 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| MU851_RS13605 (MU851_13575) | 2844648..2845298 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| MU851_RS13610 (MU851_13580) | 2845323..2845985 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T241876 NZ_CP095276:c2842429-2842326 [Enterobacter hormaechei subsp. xiangfangensis]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT241876 NZ_CP095276:2842313-2842522 [Enterobacter hormaechei subsp. xiangfangensis]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
