Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2294582..2294850 | Replicon | chromosome |
| Accession | NZ_CP095271 | ||
| Organism | Escherichia coli strain EC9682 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2294710..2294812 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2294582..2294850 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MU524_RS11205 | 2291136..2291798 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MU524_RS11210 | 2291821..2292477 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MU524_RS11215 | 2292579..2292809 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MU524_RS11220 | 2292948..2293322 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MU524_RS11225 | 2293326..2294198 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| MU524_RS11230 | 2294211..2294552 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2294582..2294850 | - | 269 | - | - | Antitoxin |
| - | 2294710..2294812 | + | 103 | - | - | Toxin |
| MU524_RS11235 | 2294947..2295603 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| MU524_RS11240 | 2295604..2295795 | - | 192 | WP_001296140.1 | YebW family protein | - |
| MU524_RS11245 | 2295900..2296136 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MU524_RS11250 | 2296254..2297693 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T241841 NZ_CP095271:2294710-2294812 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT241841 NZ_CP095271:c2294850-2294582 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
