Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4376045..4376190 | Replicon | chromosome |
| Accession | NZ_CP095253 | ||
| Organism | Klebsiella pneumoniae strain 21080937 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4376081..4376183 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4376045..4376190 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MU320_RS21290 (MU320_21290) | 4371175..4373235 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| MU320_RS21295 (MU320_21295) | 4373239..4373898 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| MU320_RS21300 (MU320_21300) | 4373977..4374207 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MU320_RS21305 (MU320_21305) | 4374320..4374694 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MU320_RS21310 (MU320_21310) | 4374698..4375567 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| MU320_RS21315 (MU320_21315) | 4375584..4375922 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4376045..4376190 | - | 146 | - | - | Antitoxin |
| - | 4376081..4376183 | + | 103 | - | - | Toxin |
| MU320_RS21320 (MU320_21320) | 4376558..4376701 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MU320_RS21325 (MU320_21325) | 4376806..4377774 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MU320_RS21330 (MU320_21330) | 4377931..4378584 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| MU320_RS21335 (MU320_21335) | 4378581..4378772 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MU320_RS21340 (MU320_21340) | 4378870..4379109 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MU320_RS21345 (MU320_21345) | 4379225..4380658 | - | 1434 | WP_101345779.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T241790 NZ_CP095253:4376081-4376183 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT241790 NZ_CP095253:c4376190-4376045 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
