Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4392390..4392535 | Replicon | chromosome |
| Accession | NZ_CP095234 | ||
| Organism | Klebsiella pneumoniae strain 21072329 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4392426..4392528 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4392390..4392535 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MU289_RS21375 (MU289_21375) | 4387520..4389580 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| MU289_RS21380 (MU289_21380) | 4389584..4390243 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| MU289_RS21385 (MU289_21385) | 4390322..4390552 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MU289_RS21390 (MU289_21390) | 4390665..4391039 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MU289_RS21395 (MU289_21395) | 4391043..4391912 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| MU289_RS21400 (MU289_21400) | 4391929..4392267 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4392390..4392535 | - | 146 | - | - | Antitoxin |
| - | 4392426..4392528 | + | 103 | - | - | Toxin |
| MU289_RS21405 (MU289_21405) | 4392903..4393046 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MU289_RS21410 (MU289_21410) | 4393151..4394119 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MU289_RS21415 (MU289_21415) | 4394276..4394929 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| MU289_RS21420 (MU289_21420) | 4394926..4395117 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MU289_RS21425 (MU289_21425) | 4395215..4395454 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MU289_RS21430 (MU289_21430) | 4395570..4397003 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T241710 NZ_CP095234:4392426-4392528 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT241710 NZ_CP095234:c4392535-4392390 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
