Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2929640..2929785 | Replicon | chromosome |
| Accession | NZ_CP095180 | ||
| Organism | Enterobacter roggenkampii strain Ek140 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2929647..2929750 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2929640..2929785 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MUY32_RS14195 (MUY32_14195) | 2924855..2926303 | + | 1449 | WP_195319554.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MUY32_RS14200 (MUY32_14200) | 2926410..2926649 | + | 240 | WP_008500472.1 | YebV family protein | - |
| MUY32_RS14205 (MUY32_14205) | 2926684..2927328 | - | 645 | WP_032652374.1 | protein-serine/threonine phosphatase | - |
| MUY32_RS14210 (MUY32_14210) | 2927495..2928436 | + | 942 | WP_248275027.1 | VirK/YbjX family protein | - |
| MUY32_RS14215 (MUY32_14215) | 2928743..2929234 | - | 492 | WP_023293949.1 | hypothetical protein | - |
| - | 2929640..2929785 | + | 146 | - | - | Antitoxin |
| - | 2929647..2929750 | - | 104 | - | - | Toxin |
| MUY32_RS14220 (MUY32_14220) | 2929889..2930227 | - | 339 | WP_008500468.1 | YebY family protein | - |
| MUY32_RS14225 (MUY32_14225) | 2930244..2931113 | - | 870 | WP_248275028.1 | copper homeostasis membrane protein CopD | - |
| MUY32_RS14230 (MUY32_14230) | 2931115..2931486 | - | 372 | WP_008500466.1 | CopC domain-containing protein YobA | - |
| MUY32_RS14235 (MUY32_14235) | 2931624..2931854 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| MUY32_RS14240 (MUY32_14240) | 2931965..2932615 | + | 651 | WP_008500464.1 | carbon-nitrogen hydrolase family protein | - |
| MUY32_RS14245 (MUY32_14245) | 2932640..2933302 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T241684 NZ_CP095180:c2929750-2929647 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT241684 NZ_CP095180:2929640-2929785 [Enterobacter roggenkampii]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
