Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2784784..2784987 | Replicon | chromosome |
| Accession | NZ_CP095177 | ||
| Organism | Enterobacter hormaechei strain K528 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2784791..2784894 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2784784..2784987 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MUY31_RS13500 (MUY31_13500) | 2779873..2780202 | + | 330 | WP_199129937.1 | hypothetical protein | - |
| MUY31_RS13505 (MUY31_13505) | 2780202..2780354 | + | 153 | WP_199129942.1 | DUF1317 family protein | - |
| MUY31_RS13510 (MUY31_13510) | 2780351..2780902 | + | 552 | WP_199129938.1 | phage N-6-adenine-methyltransferase | - |
| MUY31_RS13515 (MUY31_13515) | 2780899..2781117 | + | 219 | WP_006809796.1 | hypothetical protein | - |
| MUY31_RS13520 (MUY31_13520) | 2781114..2781629 | + | 516 | WP_006809797.1 | HNH endonuclease | - |
| MUY31_RS13525 (MUY31_13525) | 2781613..2781930 | + | 318 | WP_032673614.1 | hypothetical protein | - |
| MUY31_RS13530 (MUY31_13530) | 2781927..2782118 | + | 192 | WP_006809799.1 | DUF1382 family protein | - |
| MUY31_RS13535 (MUY31_13535) | 2782210..2782428 | + | 219 | WP_032608692.1 | TraR/DksA family transcriptional regulator | - |
| MUY31_RS13540 (MUY31_13540) | 2782428..2782739 | + | 312 | WP_199129943.1 | DUF2591 family protein | - |
| MUY31_RS13545 (MUY31_13545) | 2782717..2782956 | + | 240 | WP_063401377.1 | DUF4222 domain-containing protein | - |
| MUY31_RS13550 (MUY31_13550) | 2782966..2783226 | + | 261 | WP_063401378.1 | hypothetical protein | - |
| MUY31_RS13555 (MUY31_13555) | 2783387..2783659 | + | 273 | WP_023300430.1 | excisionase | - |
| MUY31_RS13560 (MUY31_13560) | 2783628..2784713 | + | 1086 | WP_045897902.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2784784..2784987 | + | 204 | - | - | Antitoxin |
| - | 2784791..2784894 | - | 104 | - | - | Toxin |
| MUY31_RS13565 (MUY31_13565) | 2785036..2785374 | - | 339 | WP_048240591.1 | YebY family protein | - |
| MUY31_RS13570 (MUY31_13570) | 2785391..2786260 | - | 870 | WP_048240589.1 | copper homeostasis membrane protein CopD | - |
| MUY31_RS13575 (MUY31_13575) | 2786262..2786633 | - | 372 | WP_045329847.1 | CopC domain-containing protein YobA | - |
| MUY31_RS13580 (MUY31_13580) | 2786771..2787001 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| MUY31_RS13585 (MUY31_13585) | 2787113..2787763 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| MUY31_RS13590 (MUY31_13590) | 2787788..2788450 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 2730067..2790507 | 60440 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T241666 NZ_CP095177:c2784894-2784791 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT241666 NZ_CP095177:2784784-2784987 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
