Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2942937..2943080 | Replicon | chromosome |
| Accession | NZ_CP095170 | ||
| Organism | Enterobacter roggenkampii strain K666 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2942942..2943045 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2942937..2943080 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MUY33_RS14225 (MUY33_14225) | 2939197..2940645 | + | 1449 | WP_195319554.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MUY33_RS14230 (MUY33_14230) | 2940752..2940991 | + | 240 | WP_008500472.1 | YebV family protein | - |
| MUY33_RS14235 (MUY33_14235) | 2941026..2941670 | - | 645 | WP_032652374.1 | protein-serine/threonine phosphatase | - |
| MUY33_RS14240 (MUY33_14240) | 2941837..2942778 | + | 942 | WP_032652376.1 | VirK/YbjX family protein | - |
| - | 2942937..2943080 | + | 144 | - | - | Antitoxin |
| - | 2942942..2943045 | - | 104 | - | - | Toxin |
| MUY33_RS14245 (MUY33_14245) | 2943184..2943522 | - | 339 | WP_032652385.1 | YebY family protein | - |
| MUY33_RS14250 (MUY33_14250) | 2943539..2944408 | - | 870 | WP_032652388.1 | copper homeostasis membrane protein CopD | - |
| MUY33_RS14255 (MUY33_14255) | 2944410..2944781 | - | 372 | WP_008500466.1 | CopC domain-containing protein YobA | - |
| MUY33_RS14260 (MUY33_14260) | 2944919..2945149 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| MUY33_RS14265 (MUY33_14265) | 2945260..2945910 | + | 651 | WP_008500464.1 | carbon-nitrogen hydrolase family protein | - |
| MUY33_RS14270 (MUY33_14270) | 2945935..2946597 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrB | 2925409..3015562 | 90153 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T241649 NZ_CP095170:c2943045-2942942 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT241649 NZ_CP095170:2942937-2943080 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
