Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2889259..2889402 | Replicon | chromosome |
| Accession | NZ_CP095165 | ||
| Organism | Enterobacter roggenkampii strain K475-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2889264..2889367 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2889259..2889402 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MUY30_RS13845 (MUY30_13845) | 2885520..2886968 | + | 1449 | WP_206513385.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MUY30_RS13850 (MUY30_13850) | 2887074..2887313 | + | 240 | WP_008500472.1 | YebV family protein | - |
| MUY30_RS13855 (MUY30_13855) | 2887348..2887992 | - | 645 | WP_039266603.1 | protein-serine/threonine phosphatase | - |
| MUY30_RS13860 (MUY30_13860) | 2888159..2889100 | + | 942 | WP_021240429.1 | VirK/YbjX family protein | - |
| - | 2889259..2889402 | + | 144 | - | - | Antitoxin |
| - | 2889264..2889367 | - | 104 | - | - | Toxin |
| MUY30_RS13865 (MUY30_13865) | 2889506..2889844 | - | 339 | WP_008500468.1 | YebY family protein | - |
| MUY30_RS13870 (MUY30_13870) | 2889861..2890730 | - | 870 | WP_063435833.1 | copper homeostasis membrane protein CopD | - |
| MUY30_RS13875 (MUY30_13875) | 2890732..2891103 | - | 372 | WP_126288321.1 | CopC domain-containing protein YobA | - |
| MUY30_RS13880 (MUY30_13880) | 2891241..2891471 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| MUY30_RS13885 (MUY30_13885) | 2891582..2892232 | + | 651 | WP_126288319.1 | carbon-nitrogen hydrolase family protein | - |
| MUY30_RS13890 (MUY30_13890) | 2892257..2892919 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T241633 NZ_CP095165:c2889367-2889264 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT241633 NZ_CP095165:2889259-2889402 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
