Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2035584..2035729 | Replicon | chromosome |
| Accession | NZ_CP095150 | ||
| Organism | Klebsiella pneumoniae strain Iso00073 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2035620..2035722 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2035584..2035729 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MU411_RS09780 | 2030714..2032774 | + | 2061 | WP_064145333.1 | oligopeptidase B | - |
| MU411_RS09785 | 2032778..2033437 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| MU411_RS09790 | 2033516..2033746 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MU411_RS09795 | 2033859..2034233 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MU411_RS09800 | 2034237..2035106 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| MU411_RS09805 | 2035123..2035461 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2035584..2035729 | - | 146 | - | - | Antitoxin |
| - | 2035620..2035722 | + | 103 | - | - | Toxin |
| MU411_RS09810 | 2036098..2036241 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MU411_RS09815 | 2036346..2037314 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MU411_RS09820 | 2037471..2038124 | + | 654 | WP_064145335.1 | protein-serine/threonine phosphatase | - |
| MU411_RS09825 | 2038121..2038312 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MU411_RS09830 | 2038410..2038649 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MU411_RS09835 | 2038765..2040198 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T241543 NZ_CP095150:2035620-2035722 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT241543 NZ_CP095150:c2035729-2035584 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
