Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1974394..1974539 | Replicon | chromosome |
| Accession | NZ_CP095132 | ||
| Organism | Klebsiella pneumoniae strain Iso00267 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1974430..1974532 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1974394..1974539 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MU415_RS09575 | 1969524..1971584 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| MU415_RS09580 | 1971588..1972247 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| MU415_RS09585 | 1972326..1972556 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MU415_RS09590 | 1972669..1973043 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MU415_RS09595 | 1973047..1973916 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| MU415_RS09600 | 1973933..1974271 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1974394..1974539 | - | 146 | - | - | Antitoxin |
| - | 1974430..1974532 | + | 103 | - | - | Toxin |
| MU415_RS09605 | 1974907..1975050 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MU415_RS09610 | 1975155..1976123 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| MU415_RS09615 | 1976280..1976933 | + | 654 | WP_020804905.1 | protein-serine/threonine phosphatase | - |
| MU415_RS09620 | 1976930..1977121 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MU415_RS09625 | 1977219..1977458 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MU415_RS09630 | 1977574..1979007 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T241453 NZ_CP095132:1974430-1974532 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT241453 NZ_CP095132:c1974539-1974394 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
