Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1998827..1999098 | Replicon | chromosome |
| Accession | NZ_CP095125 | ||
| Organism | Escherichia coli strain Iso00270 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1998957..1999060 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1998827..1999098 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MU416_RS09495 | 1995382..1996044 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MU416_RS09500 | 1996068..1996724 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MU416_RS09505 | 1996826..1997056 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MU416_RS09510 | 1997195..1997569 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MU416_RS09515 | 1997573..1998445 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| MU416_RS09520 | 1998458..1998799 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1998827..1999098 | - | 272 | - | - | Antitoxin |
| - | 1998957..1999060 | + | 104 | - | - | Toxin |
| MU416_RS09525 | 1999195..1999851 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| MU416_RS09530 | 1999852..2000043 | - | 192 | WP_000457842.1 | YebW family protein | - |
| MU416_RS09535 | 2000148..2000384 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MU416_RS09540 | 2000502..2001941 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T241429 NZ_CP095125:1998957-1999060 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT241429 NZ_CP095125:c1999098-1998827 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
