Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2012079..2012350 | Replicon | chromosome |
| Accession | NZ_CP095088 | ||
| Organism | Escherichia coli isolate w264 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2012209..2012312 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2012079..2012350 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MUK78_RS09690 | 2008634..2009296 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MUK78_RS09695 | 2009320..2009976 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MUK78_RS09700 | 2010078..2010308 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MUK78_RS09705 | 2010447..2010821 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| MUK78_RS09710 | 2010825..2011697 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| MUK78_RS09715 | 2011710..2012051 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2012079..2012350 | - | 272 | - | - | Antitoxin |
| - | 2012209..2012312 | + | 104 | - | - | Toxin |
| MUK78_RS09720 | 2012447..2013103 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| MUK78_RS09725 | 2013104..2013295 | - | 192 | WP_001338167.1 | YebW family protein | - |
| MUK78_RS09730 | 2013400..2013636 | - | 237 | WP_001338166.1 | YebV family protein | - |
| MUK78_RS09735 | 2013754..2015193 | - | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T241279 NZ_CP095088:2012209-2012312 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT241279 NZ_CP095088:c2012350-2012079 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
