Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2252445..2252713 | Replicon | chromosome |
| Accession | NZ_CP095086 | ||
| Organism | Escherichia coli isolate EC5654 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2252573..2252675 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2252445..2252713 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MUK77_RS10585 | 2248999..2249661 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MUK77_RS10590 | 2249684..2250340 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MUK77_RS10595 | 2250442..2250672 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MUK77_RS10600 | 2250811..2251185 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MUK77_RS10605 | 2251189..2252061 | + | 873 | WP_118253160.1 | copper homeostasis membrane protein CopD | - |
| MUK77_RS10610 | 2252074..2252415 | + | 342 | WP_000977376.1 | YebY family protein | - |
| - | 2252445..2252713 | - | 269 | - | - | Antitoxin |
| - | 2252573..2252675 | + | 103 | - | - | Toxin |
| MUK77_RS10615 | 2252810..2253466 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| MUK77_RS10620 | 2253467..2253658 | - | 192 | WP_001296140.1 | YebW family protein | - |
| MUK77_RS10625 | 2253763..2253999 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MUK77_RS10630 | 2254117..2255556 | - | 1440 | WP_001467894.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T241241 NZ_CP095086:2252573-2252675 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT241241 NZ_CP095086:c2252713-2252445 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
