Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1901643..1901914 | Replicon | chromosome |
| Accession | NC_012967 | ||
| Organism | Escherichia coli B str. REL606 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1901681..1901784 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1901643..1901914 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECB_RS09545 | 1898800..1900239 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECB_RS09550 | 1900357..1900593 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECB_RS09555 | 1900698..1900889 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECB_RS09560 | 1900890..1901546 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1901643..1901914 | + | 272 | - | - | Antitoxin |
| - | 1901681..1901784 | - | 104 | - | - | Toxin |
| ECB_RS09570 | 1901941..1902282 | - | 342 | WP_000976472.1 | YebY family protein | - |
| ECB_RS09575 | 1902295..1903167 | - | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| ECB_RS09580 | 1903171..1903545 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECB_RS09585 | 1903684..1903914 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECB_RS09590 | 1904016..1904672 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| ECB_RS09595 | 1904696..1905358 | + | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T24122 NC_012967:c1901784-1901681 [Escherichia coli B str. REL606]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT24122 NC_012967:1901643-1901914 [Escherichia coli B str. REL606]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
