Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2199401..2199672 | Replicon | chromosome |
| Accession | NZ_CP095083 | ||
| Organism | Escherichia coli strain EC6868 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2199531..2199634 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2199401..2199672 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MUK76_RS10430 | 2195956..2196618 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MUK76_RS10435 | 2196642..2197298 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MUK76_RS10440 | 2197400..2197630 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MUK76_RS10445 | 2197769..2198143 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| MUK76_RS10450 | 2198147..2199019 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| MUK76_RS10455 | 2199032..2199373 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2199401..2199672 | - | 272 | - | - | Antitoxin |
| - | 2199531..2199634 | + | 104 | - | - | Toxin |
| MUK76_RS10460 | 2199769..2200425 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| MUK76_RS10465 | 2200426..2200617 | - | 192 | WP_001296140.1 | YebW family protein | - |
| MUK76_RS10470 | 2200722..2200958 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MUK76_RS10475 | 2201076..2202515 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2190228..2215511 | 25283 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T241210 NZ_CP095083:2199531-2199634 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT241210 NZ_CP095083:c2199672-2199401 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
