Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2381998..2382166 | Replicon | chromosome |
| Accession | NZ_CP094999 | ||
| Organism | Klebsiella michiganensis strain fxq | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2382056..2382159 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2381998..2382166 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MT472_RS11745 (MT472_11745) | 2377125..2379185 | + | 2061 | WP_042945478.1 | oligopeptidase B | - |
| MT472_RS11750 (MT472_11750) | 2379192..2379851 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| MT472_RS11755 (MT472_11755) | 2379930..2380160 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| MT472_RS11760 (MT472_11760) | 2380296..2380670 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| MT472_RS11765 (MT472_11765) | 2380675..2381544 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| MT472_RS11770 (MT472_11770) | 2381561..2381899 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2381998..2382166 | - | 169 | - | - | Antitoxin |
| - | 2382056..2382159 | + | 104 | - | - | Toxin |
| MT472_RS11775 (MT472_11775) | 2382284..2383243 | - | 960 | WP_042945476.1 | spore coat protein U domain-containing protein | - |
| MT472_RS11780 (MT472_11780) | 2383258..2385588 | - | 2331 | WP_042945474.1 | fimbria/pilus outer membrane usher protein | - |
| MT472_RS11785 (MT472_11785) | 2385591..2386355 | - | 765 | WP_042945473.1 | fimbria/pilus periplasmic chaperone | - |
| MT472_RS11790 (MT472_11790) | 2386374..2386892 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T240927 NZ_CP094999:2382056-2382159 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT240927 NZ_CP094999:c2382166-2381998 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
