Detailed information of TA system TA240834

Bioinformatically predicted

Overview

TA module

• Type: VIII
• Classification (family/domain): SdsR-RyeA/-
• Location: 2481913..2481995
• Replicon: chromosome
• Accession: NZ_CP094943
• Organism: Dickeya dadantii strain FZ06

Toxin (RNA)

Gene name	SdsR
Locus tag	-
Coordinates	2481915..2481995 (-)

Antitoxin (RNA)

Gene name	RyeA
Locus tag	-
Coordinates	2481913..2481995 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
MUB29_RS10885	2477796..2478911	-	1116	WP_263065692.1	ATP-binding protein	-
MUB29_RS10890	2478904..2480028	-	1125	WP_216282825.1	FIST N-terminal domain-containing protein	-
MUB29_RS10895	2480499..2480612	+	114	Protein_2133	IS5/IS1182 family transposase	-
MUB29_RS10900	2480650..2481714	+	1065	WP_263065695.1	aminopeptidase	-
-	2481913..2481995	+	83	-	-	Antitoxin
-	2481915..2481995	-	81	-	-	Toxin
MUB29_RS10905	2482165..2482503	-	339	WP_038922716.1	YebY family protein	-
MUB29_RS10910	2483022..2483465	+	444	WP_226054566.1	hypothetical protein	-
MUB29_RS10915	2483806..2484054	+	249	WP_216282828.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
MUB29_RS10920	2484170..2485912	-	1743	WP_263065701.1	ABC transporter permease subunit	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Sequences

Toxin

Nucleotide

• Length: 81 bp

>T240834 NZ_CP094943:c2481995-2481915 [Dickeya dadantii]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin

Nucleotide

• Length: 83 bp

>AT240834 NZ_CP094943:2481913-2481995 [Dickeya dadantii]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Antitoxin